Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs114867425 chr4:187810433 G/C 1.88E-6 485 31.23 28.57 26.8 KM Plot
PRAD rs114887176 chr4:187812317 C/T 2.09E-6 482 31.07 28.93 26.8 KM Plot
PRAD rs114919826 chr1:1159107 G/A 2.77E-10 486 31.27 30.73 13.73 KM Plot
PRAD rs115019016 chr5:154178685 G/T 0 491 30.2 33.47 4.87 KM Plot
PRAD rs11505118 chr5:1780936 C/T 0.00012 494 31.27 28.57 53.32 KM Plot
PRAD rs115104169 chr5:154357709 G/A 0 489 30.33 32.85 5.58 KM Plot
PRAD rs11519343 chr12:9436282 T/A 2.93E-5 485 29.52 32.77 29.17 KM Plot
PRAD rs115253957 chr4:187811353 C/T 2.06E-6 483 31.13 28.57 26.8 KM Plot
PRAD rs115362661 chr4:187811469 T/C 2.06E-6 483 31.13 28.57 26.8 KM Plot
PRAD rs115374618 chr5:154289883 A/C 0 494 30.23 33.47 4.87 KM Plot
PRAD rs115395913 chr4:187812174 T/C 2.17E-6 480 31.25 28.3 26.8 KM Plot
PRAD rs11541392 chr5:179036457 G/C 0.000156 483 30.73 33.07 32.9 KM Plot
PRAD rs115416893 chr4:187812242 C/T 2.16E-6 481 31.13 28.57 26.8 KM Plot
PRAD rs11546632 chr17:79634813 T/C 4.34E-5 489 30.78 31.32 25.67 KM Plot
PRAD rs11548 chr5:150407783 C/T 3.92E-6 490 30.8 30.97 15.77 KM Plot